Package: cloudos 0.4.0
Sangram Keshari Sahu
cloudos: R Client Library for CloudOS
The 'CloudOS' client library for R makes it easy to interact with CloudOS in the R environment for analysis.
Authors:
cloudos_0.4.0.tar.gz
cloudos_0.4.0.zip(r-4.5)cloudos_0.4.0.zip(r-4.4)cloudos_0.4.0.zip(r-4.3)
cloudos_0.4.0.tgz(r-4.4-any)cloudos_0.4.0.tgz(r-4.3-any)
cloudos_0.4.0.tar.gz(r-4.5-noble)cloudos_0.4.0.tar.gz(r-4.4-noble)
cloudos_0.4.0.tgz(r-4.4-emscripten)cloudos_0.4.0.tgz(r-4.3-emscripten)
cloudos.pdf |cloudos.html✨
cloudos/json (API)
NEWS
| # Install 'cloudos' in R: |
| install.packages('cloudos', repos = c('https://lifebit-ai.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lifebit-ai/cloudos/issues
Last updated 2 years agofrom:a3aca7bcbc. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 25 2024 |
| R-4.5-win | NOTE | Oct 25 2024 |
| R-4.5-linux | NOTE | Oct 25 2024 |
| R-4.4-win | NOTE | Oct 25 2024 |
| R-4.4-mac | NOTE | Oct 25 2024 |
| R-4.3-win | OK | Oct 25 2024 |
| R-4.3-mac | OK | Oct 25 2024 |
Exports:cb_apply_querycb_create_cohortcb_get_genotypic_tablecb_get_participants_tablecb_get_participants_table_longcb_get_phenotype_metadatacb_get_phenotype_statisticscb_list_cohortscb_load_cohortcb_participant_countcb_search_phenotypescb_set_columnscloudos_configurecloudos_whoamiphenotype
Dependencies:askpassclicolorspacecpp11curldplyrfansifarvergenericsggplot2gluegtablehttrisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpurrrR6rappdirsRColorBrewerrlangscalesstringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Apply a query to a cohort | cb_apply_query |
| Create Cohort | cb_create_cohort |
| Get genotypic table | cb_get_genotypic_table |
| Get participant data table | cb_get_participants_table |
| Get longform participant data table | cb_get_participants_table_long |
| Phenotype metadata | cb_get_phenotype_metadata |
| Get distribution of a phenotype in a cohort | cb_get_phenotype_statistics |
| List cohorts | cb_list_cohorts |
| Get cohort information | cb_load_cohort |
| Participant Count | cb_participant_count |
| Plot filters | cb_plot_filters |
| Search available phenotypes | cb_search_phenotypes |
| Set the columns in a cohort | cb_set_columns |
| Configure cloudos | cloudos_configure |
| whoami | cloudos_whoami |
| cohort class | cohort-class |
| Define a phenotype | phenotype |
